Week 1

Solutions

Practical 1 solutions

Tuesday

Deriving model parameters from data

Download the part 1 handout

Download script.R

Competing risks models using transition rates

Download the part 2 handout

Go to app

Solutions

Practical 1 solutions

Practical 2 solutions

Wednesday

Coding the SIR model and estimating R0

Download the handout

Each exercise is in its own self-contained app. Access them from the list below

1. Basic SIR
2. School holidays

Supporting files

• Influenza data
• Cauchemez et al.

Thursday

Expanding the SIR model

Download the handout

Each exercise is in its own self-contained app. Access them from the list below

1. Open SIR model
2. Age-stratified SIR model

Supporting files

• Next generation matrix script

Friday

Modelling vaccination

Download the handout

Each exercise is in its own self-contained app. Access them from the list below

1. Vaccine at birth
2. Perfect vaccine
3. "Imperfect" vaccines